Workflow

Put a description of your workflow here. See [here](https://snakemake.readthedocs.io/en/stable/snakefiles/reporting.html) for details.

Click the nodes to obtain details about each step.

METAPHLAN

Statistics

If the workflow has been executed in cluster/cloud, runtimes include the waiting time in the queue.

Configuration

Configuration files
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# This file should contain everything to configure the workflow on a global scale.
# In case of sample based data, it should be complemented by a samples.tsv file that contains
# one row per sample. It can be parsed easily via pandas.

samples: "../config/samples_allBatches.tsv"
#samples: "../config/samples_minimal_test.tsv" #  Batches 0-3 

metaphlan_idx: "mpa_v30_CHOCOPhlAn_201901"

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